Hamdan, Samir M.: search on Z-Library

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1

Motors, Switches, and Contacts in the Replisome

Hamdan, Samir M., Richardson, Charles C.

Journal:

Annual Review of Biochemistry

Year:

2009

Language:

english

File:

PDF, 3.56 MB

english, 2009

2

A direct fluorescent signal transducer embedded in a DNA aptamer paves the way for versatile metal-ion detection

Raducanu, Vlad-Stefan, Rashid, Fahad, Zaher, Manal S., Li, Yanyan, Merzaban, Jasmeen S., Hamdan, Samir M.

Journal:

Sensors and Actuators B: Chemical

Year:

2019

Language:

english

File:

PDF, 3.20 MB

english, 2019

3

Structure of the processive human Pol Î´ holoenzyme

Lancey, Claudia, Tehseen, Muhammad, Raducanu, Vlad-Stefan, Rashid, Fahad, Merino, Nekane, Ragan, Timothy J., Savva, Christos G., Zaher, Manal S., Shirbini, Afnan, Blanco, Francisco J., Hamdan, Samir M

Journal:

Nature Communications

Year:

2020

Language:

english

File:

PDF, 4.78 MB

english, 2020

4

Characterization of RecombinantThermococcus kodakaraensis(KOD) DNA Polymerases Produced Using Silkworm-Baculovirus Expression Vector System

Yamashita, Mami, Xu, Jian, Morokuma, Daisuke, Hirata, Kazuma, Hino, Masato, Mon, Hiroaki, Takahashi, Masateru, Hamdan, Samir M., Sakashita, Kosuke, Iiyama, Kazuhiro, Banno, Yutaka, Kusakabe, Takahiro,

Journal:

Molecular Biotechnology

Year:

2017

Language:

english

File:

PDF, 2.65 MB

english, 2017

5

Hydrolysis of the 5′-p-nitrophenyl ester of TMP by oligoribonucleases (ORN) from Escherichia coli, Mycobacterium smegmatis, and human

Ah Young Park, Christopher M. Elvin, Samir M. Hamdan, Robert J. Wood, Nancy E. Liyou, Tamarind E. Hamwood, Phil A. Jennings, Nicholas E. Dixon

Journal:

Protein Expression and Purification

Year:

2008

Language:

english

File:

PDF, 634 KB

english, 2008

6

Initial state of DNA-Dye complex sets the stage for protein induced fluorescence modulation

Rashid, Fahad, Raducanu, Vlad-Stefan, Zaher, Manal S., Tehseen, Muhammad, Habuchi, Satoshi, Hamdan, Samir M.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

7

Fusion of the Cas9 endonuclease and the VirD2 relaxase facilitates homology-directed repair for precise genome engineering in rice

Ali, Zahir, Shami, Ashwag, Sedeek, Khalid, Kamel, Radwa, Alhabsi, Abdulrahman, Tehseen, Muhammad, Hassan, Norhan, Butt, Haroon, Kababji, Ahad, Hamdan, Samir M., Mahfouz, Magdy M.

Journal:

Communications Biology

Year:

2020

File:

PDF, 2.30 MB

2020

8

Relative Contributions of Base Stacking and Electrostatic Repulsion on DNA Nicks and Gaps

Harris, Paul D., Hamdan, Samir M., Habuchi, Satoshi

Journal:

Journal of Physical Chemistry B

Year:

2020

File:

PDF, 1.87 MB

2020

9

Application of electrospray ionization mass spectrometry to study the hydrophobic interaction between the ε and θ subunits of DNA polymerase III

Rajesh Gupta, Samir M. Hamdan, Nicholas E. Dixon, Margaret M. Sheil, Jennifer L. Beck

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 159 KB

english, 2004

10

Replisome speed determines the efficiency of the Tus−Ter replication termination barrier

Elshenawy, Mohamed M., Jergic, Slobodan, Xu, Zhi-Qiang, Sobhy, Mohamed A., Takahashi, Masateru, Oakley, Aaron J., Dixon, Nicholas E., Hamdan, Samir M.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.00 MB

english, 2015

11

Deracemization of Secondary Alcohols by using a Single Alcohol Dehydrogenase

Karume, Ibrahim, Takahashi, Masateru, Hamdan, Samir M., Musa, Musa M.

Journal:

Year:

2016

Language:

english

File:

PDF, 642 KB

english, 2016

12

Missed cleavage opportunities by FEN1 lead to Okazaki fragment maturation via the long-flap pathway

Zaher, Manal S, Rashid, Fahad, Song, Bo, Joudeh, Luay I, Sobhy, Mohamed A, Tehseen, Muhammad, Hingorani, Manju M, Hamdan, Samir M

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 3.72 MB

english, 2018

13

Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis

Hamdan, Samir M., Loparo, Joseph J., Takahashi, Masateru, Richardson, Charles C., van Oijen, Antoine M.

Journal:

Year:

2008

Language:

english

File:

PDF, 1.21 MB

english, 2008

14

Asymmetric Reduction of Substituted 2-Tetralones by Thermoanaerobacter pseudoethanolicus Secondary Alcohol Dehydrogenase

Bsharat, Odey, Musa, Musa M., Vieille, Claire, Oladepo, Sulayman A., Takahashi, Masateru, Hamdan, Samir M.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.59 MB

english, 2017

15

Functional Binding of E-selectin to its Ligands is Enhanced by Structural Features Beyond its Lectin Domain

Aleisa, Fajr A, Sakashita, Kosuke, Lee, Jae Man, AbuSamra, Dina B., Alwan, Bader, Nozue, Shuho, Tehseen, Muhammad, Hamdan, Samir M, Habuchi, Satoshi, Kusakabe, Takahiro, Merzaban, Jasmeen S

Journal:

Journal of Biological Chemistry

Year:

2020

Language:

english

File:

PDF, 5.30 MB

english, 2020

16

Linear Diffusion of T7 DNA Polymerase: Thioredoxin is Required to Maintain Close Contact with DNA

Etson, Candice M., Hamdan, Samir M., Richardson, Charles C., van Oijen, Antoine M.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 38 KB

english, 2009

17

Hydrolysis of the 5‘- p -Nitrophenyl Ester of TMP by the Proofreading Exonuclease (ε) Subunit of Escherichia coli DNA Polymerase III †

Hamdan, Samir, Bulloch, Esther M., Thompson, Phillip R., Beck, Jennifer L., Yang, Ji Yeon, Crowther, Jeffrey A., Lilley, Penelope E., Carr, Paul D., Ollis, David L., Brown, Susan E., Dixon, Nicholas E

Journal:

Year:

2002

Language:

english

File:

PDF, 119 KB

english, 2002

18

Single-molecule studies of fork dynamics in Escherichia coli DNA replication

Tanner, Nathan A, Hamdan, Samir M, Jergic, Slobodan, Schaeffer, Patrick M, Dixon, Nicholas E, van Oijen, Antoine M

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 386 KB

english, 2008

19

Sequential and Multistep Substrate Interrogation Provides the Scaffold for Specificity in Human Flap Endonuclease 1

Sobhy, Mohamed A., Joudeh, Luay I., Huang, Xiaojuan, Takahashi, Masateru, Hamdan, Samir M.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.21 MB

english, 2013

20

Back Cover: Deracemization of Secondary Alcohols by using a Single Alcohol Dehydrogenase (ChemCatChem 8/2016)

Karume, Ibrahim, Takahashi, Masateru, Hamdan, Samir M., Musa, Musa M.

Journal:

Year:

2016

File:

PDF, 1024 KB

2016

21

Racemization of enantiopure secondary alcohols by Thermoanaerobacter ethanolicus secondary alcohol dehydrogenase

Musa, Musa M., Phillips, Robert S., Laivenieks, Maris, Vieille, Claire, Takahashi, Masateru, Hamdan, Samir M.

Journal:

Organic & Biomolecular Chemistry

Year:

2013

Language:

english

File:

PDF, 189 KB

english, 2013

22

Interplay of Body Mass Index and Gender in Wound Complications After Lower Extremity Arterial Surgery

Arnaoutakis, Dean J., Scully, Rebecca E., Sharma, Gaurav, Shah, Samir K., Hamdan, Allen D., Barshes, Neal R., Ozaki, C. Keith, Belkin, Michael, Nguyen, Louis L.

Journal:

Journal of Vascular Surgery

Year:

2016

Language:

english

File:

PDF, 49 KB

english, 2016

23

Stereoinversion of R -Configured Secondary Alcohols Using a Single Enzymatic Approach

Musa, Musa M., Karume, Ibrahim, Takahashi, Masateru, Hamdan, Samir M., Ullah, Nisar

Journal:

ChemistrySelect

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

24

Resolution of the Holliday junction recombination intermediate by human GEN1 at the single-molecule level

Sobhy, Mohamed A, Bralić, Amer, Raducanu, Vlad-Stefan, Takahashi, Masateru, Tehseen, Muhammad, Rashid, Fahad, Zaher, Manal S, Hamdan, Samir M

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.01 MB

english, 2018

25

Quantitative Characterization of E-selectin Interaction with Native CD44 and P-selectin Glycoprotein Ligand-1 (PSGL-1) Using a Real Time Immunoprecipitation-based Binding Assay

AbuSamra, Dina B., Al-Kilani, Alia, Hamdan, Samir M., Sakashita, Kosuke, Gadhoum, Samah Z., Merzaban, Jasmeen S.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 1.53 MB

english, 2015

26

The Impact of Vascular Surgery Wound Complications on Quality of Life

McGillicuddy, Edward A., Ozaki, C. Keith, Shah, Samir K., Belkin, Michael, Hamdan, Allen H., Barshes, Neal R., Wyers, Mark C., Nguyen, Louis L.

Journal:

Journal of Vascular Surgery

Year:

2015

Language:

english

File:

PDF, 46 KB

english, 2015

27

What is all this fuss about Tus? Comparison of recent findings from biophysical and biochemical experiments

Berghuis, Bojk A., Raducanu, Vlad-Stefan, Elshenawy, Mohamed M., Jergic, Slobodan, Depken, Martin, Dixon, Nicholas E., Hamdan, Samir M., Dekker, Nynke H.

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Year:

2017

Language:

english

File:

PDF, 3.94 MB

english, 2017

28

Nickel subsulfide is similar to potassium dichromate in protecting normal human fibroblasts from the mutagenic effects of benzo[a]pyrene diolepoxide

Samir Hamdan, Brent Morse, David Reinhold

Journal:

Environmental and Molecular Mutagenesis

Year:

1999

Language:

english

File:

PDF, 70 KB

english, 1999

29

Single-Molecule Förster Resonance Energy Transfer Methods for Real-Time Investigation of the Holliday Junction Resolution by GEN1

Sobhy, Mohamed A., Bralić, Amer, Raducanu, Vlad-Stefan, Tehseen, Muhammad, Ouyang, Yujing, Takahashi, Masateru, Rashid, Fahad, Zaher, Manal S., Hamdan, Samir M.

Journal:

Journal of Visualized Experiments

Year:

2019

Language:

english

File:

PDF, 1.47 MB

english, 2019

30

Deracemization and Stereoinversion of Alcohols Using Two Mutants of Secondary Alcohol Dehydrogenase from Thermoanaerobacter pseudoethanolicus

Nafiu, Sodiq A., Takahashi, Masateru, Takahashi, Etsuko, Hamdan, Samir M., Musa, Musa M.

Journal:

European Journal of Organic Chemistry

Year:

2020

File:

PDF, 1.04 MB

2020

31

Peptide ligands specific to the oxidized form of Escherichia coli thioredoxin

Michael D. Scholle, Bridget S. Banach, Samir M. Hamdan, Charles C. Richardson, Brian K. Kay

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2008

Language:

english

File:

PDF, 447 KB

english, 2008

32

Thioredoxin Suppresses Microscopic Hopping of T7 DNA Polymerase on Duplex DNA

Candice M. Etson, Samir M. Hamdan, Charles C. Richardson, Antoine M. van Oijen and Charles C. Richardson

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.46 MB

english, 2010

33

Two mechanisms coordinate replication termination by the Escherichia coli Tus– Ter complex

Pandey, Manjula, Elshenawy, Mohamed M., Jergic, Slobodan, Takahashi, Masateru, Dixon, Nicholas E., Hamdan, Samir M., Patel, Smita S.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.04 MB

english, 2015

34

The impact of vascular surgery wound complications on quality of life

McGillicuddy, Edward A., Ozaki, C. Keith, Shah, Samir K., Belkin, Michael, Hamdan, Allen, Barshes, Neal, Wyers, Mark, Nguyen, Louis

Journal:

Journal of Vascular Surgery

Year:

2016

Language:

english

File:

PDF, 203 KB

english, 2016

35

Two chromatographic schemes for protein purification involving the biotin/avidin interaction under native conditions

Raducanu, Vlad-Stefan, Tehseen, Muhammad, Shirbini, Afnan, Raducanu, Daniela-Violeta, Hamdan, Samir M.

Journal:

Journal of Chromatography A

Year:

2020

File:

PDF, 2.52 MB

2020

36

Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair

Tsutakawa, Susan E., Tsai, Chi-Lin, Yan, Chunli, BraliÄ, Amer, Chazin, Walter J., Hamdan, Samir M., SchÃ¤rer, Orlando D., Ivanov, Ivaylo, Tainer, John A.

Journal:

Year:

2020

File:

PDF, 11.29 MB

2020

37

Single-Molecule Imaging of PAF15-PCNA using DNA Skybridge

Kim, Daehyung, biasio, Alfredo D., Gonzalez-MagaÃ±a, Amaia, Bu, Gayun, Rashid, Fahad, Hamdan, Samir, Blanco, Francisco, Lee Lee, Jong-Bong

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 51 KB

2020

38

Expanding the Substrate Specificity of Thermoanaerobacter pseudoethanolicus Secondary Alcohol Dehydrogenase by a Dual Site Mutation

Musa, Musa M., Bsharat, Odey, Karume, Ibrahim, Vieille, Claire, Takahashi, Masateru, Hamdan, Samir

Journal:

European Journal of Organic Chemistry

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

39

Primer initiation and extension by T7 DNA primase

Qimron, Udi, Lee, Seung-Joo, Hamdan, Samir M, Richardson, Charles C

Journal:

The EMBO Journal

Year:

2006

Language:

english

File:

PDF, 354 KB

english, 2006

40

Dynamics Of DNA Replication Loops Reveal Temporal Control Of Lagging-strand Synthesis

Hamdan, Samir M., Loparo, Joseph J., Takahashi, Masateru, Richardson, Charles C., Vanoijen, Antoine M.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 89 KB

english, 2009

41

Single Molecule Biology || Single Molecule Studies of Nucleic Acid Enzymes

Hamdan, Samir M.

Year:

2009

Language:

english

File:

PDF, 529 KB

english, 2009

42

Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome

Samir Hamdan, Paul D. Carr, Susan E. Brown, David L. Ollis, Nicholas E. Dixon

Journal:

Year:

2002

Language:

english

File:

PDF, 547 KB

english, 2002

43

PC56. The Impact of Vascular Surgery Wound Complications on Quality of Life

McGillicuddy, Edward A., Ozaki, C. Keith, Shah, Samir K., Belkin, Michael, Hamdan, Allen H., Barshes, Neal R., Wyers, Mark C., Nguyen, Louis L.

Journal:

Journal of Vascular Surgery

Year:

2015

Language:

english

File:

PDF, 149 KB

english, 2015

44

Dynamic DNA Helicase-DNA Polymerase Interactions Assure Processive Replication Fork Movement

Samir M. Hamdan, Donald E. Johnson, Nathan A. Tanner, Jong-Bong Lee, Udi Qimron, Stanley Tabor, Antoine M. van Oijen, Charles C. Richardson

Journal:

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

45

iSCAN: An RT-LAMP-coupled CRISPR-Cas12 module for rapid, sensitive detection of SARS-CoV-2

Ali, Zahir, Aman, Rashid, Mahas, Ahmed, Rao, Gundra Sivakrishna, Tehseen, Muhammad, Marsic, Tin, Salunke, Rahul, Subudhi, Amit K., Hala, Sharif M., Hamdan, Samir M., Pain, Arnab, Alofi, Fadwa S., Also

Journal:

Year:

2020

File:

PDF, 2.91 MB

2020

46

TSGIT : an Nâ and Câterminal tandem tag system for purification of native and inteinâmediated ligationâready proteins

Raducanu, VladâStefan, Raducanu, DanielaâVioleta, Ouyang, Yujing, Tehseen, Muhammad, Takahashi, Masateru, Hamdan, Samir M.

Journal:

Protein Science

Year:

2020

File:

PDF, 3.94 MB

2020

47

Single-molecule studies of fork dynamics in Escherichia coli DNA replication

Tanner, Nathan A, Hamdan, Samir M, Jergic, Slobodan, Loscha, Karin V, Schaeffer, Patrick M, Dixon, Nicholas E, van Oijen, Antoine M

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 92 KB

english, 2008

48

Dual enzymatic dynamic kinetic resolution by Thermoanaerobacter ethanolicus secondary alcohol dehydrogenase and Candida antarctica lipase B

Karume, Ibrahim, Musa, Musa M., Bsharat, Odey, Takahashi, Masateru, Hamdan, Samir M., El Ali, Bassam

Journal:

Year:

2016

Language:

english

File:

PDF, 517 KB

english, 2016

49

Positioning the 5'-flap junction in the active site controls the rate of flap endonuclease-1-catalyzed DNA cleavage

Song, Bo, Hamdan, Samir M, Hingorani, Manju M

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 4.99 MB

english, 2018

50

DNA skybridge: 3D structure producing a light sheet for high-throughput single-molecule imaging

Kim, Daehyung, Rashid, Fahad, Cho, Yeonmo, Zaher, Manal S, Cho, I I Hwan, Hamdan, Samir M, Jeong, Cherlhyun, Lee, Jong-Bong

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 2.56 MB

english, 2019

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